Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SCE80248.1 | SCE80262.1 | GA0070561_1767 | GA0070561_1768 | Hypothetical protein. | Deoxyribonuclease-4. | 0.802 |
SCE80262.1 | SCE80248.1 | GA0070561_1768 | GA0070561_1767 | Deoxyribonuclease-4. | Hypothetical protein. | 0.802 |
SCE80262.1 | SCE87141.1 | GA0070561_1768 | GA0070561_2049 | Deoxyribonuclease-4. | Hypothetical protein; Manually curated. | 0.487 |
SCE80262.1 | SCF05395.1 | GA0070561_1768 | GA0070561_3243 | Deoxyribonuclease-4. | 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase. | 0.506 |
SCE80262.1 | SCF11913.1 | GA0070561_1768 | GA0070561_3705 | Deoxyribonuclease-4. | Exodeoxyribonuclease-3. | 0.958 |
SCE80262.1 | SCF12788.1 | GA0070561_1768 | GA0070561_3765 | Deoxyribonuclease-4. | Histidinol-phosphate phosphatase family domain-containing protein/HAD-superfamily hydrolase, subfamily IIIA. | 0.489 |
SCE80262.1 | SCF39422.1 | GA0070561_1768 | GA0070561_6158 | Deoxyribonuclease-4. | DNA polymerase-3 subunit epsilon. | 0.479 |
SCE80262.1 | SCF41085.1 | GA0070561_1768 | GA0070561_6388 | Deoxyribonuclease-4. | Hypothetical protein. | 0.487 |
SCE80262.1 | nfo | GA0070561_1768 | GA0070561_6199 | Deoxyribonuclease-4. | Endonuclease IV; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin. | 0.893 |
SCE80262.1 | nth | GA0070561_1768 | GA0070561_4521 | Deoxyribonuclease-4. | DNA-(apurinic or apyrimidinic site) lyase; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.573 |
SCE80262.1 | ung | GA0070561_1768 | GA0070561_4004 | Deoxyribonuclease-4. | Uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. | 0.534 |
SCE87141.1 | SCE80262.1 | GA0070561_2049 | GA0070561_1768 | Hypothetical protein; Manually curated. | Deoxyribonuclease-4. | 0.487 |
SCE87141.1 | SCF11913.1 | GA0070561_2049 | GA0070561_3705 | Hypothetical protein; Manually curated. | Exodeoxyribonuclease-3. | 0.878 |
SCE87141.1 | nfo | GA0070561_2049 | GA0070561_6199 | Hypothetical protein; Manually curated. | Endonuclease IV; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin. | 0.487 |
SCE87141.1 | ung | GA0070561_2049 | GA0070561_4004 | Hypothetical protein; Manually curated. | Uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. | 0.470 |
SCF05395.1 | SCE80262.1 | GA0070561_3243 | GA0070561_1768 | 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase. | Deoxyribonuclease-4. | 0.506 |
SCF05395.1 | SCF11913.1 | GA0070561_3243 | GA0070561_3705 | 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase. | Exodeoxyribonuclease-3. | 0.912 |
SCF05395.1 | nfo | GA0070561_3243 | GA0070561_6199 | 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase. | Endonuclease IV; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin. | 0.433 |
SCF11913.1 | SCE80262.1 | GA0070561_3705 | GA0070561_1768 | Exodeoxyribonuclease-3. | Deoxyribonuclease-4. | 0.958 |
SCF11913.1 | SCE87141.1 | GA0070561_3705 | GA0070561_2049 | Exodeoxyribonuclease-3. | Hypothetical protein; Manually curated. | 0.878 |
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