STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCE86136.1Right handed beta helix region. (561 aa)    
Predicted Functional Partners:
SCE68623.1
Hypothetical protein.
   
   0.782
SCE75789.1
Signal transduction histidine kinase.
    
 0.706
ribBA
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.676
SCE86101.1
Pyruvate dehydrogenase E1 component alpha subunit.
    
  0.627
SCE86129.1
Pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase).
    
  0.627
SCF19966.1
HAMP domain-containing protein.
    
  0.622
SCE70474.1
Diguanylate cyclase (GGDEF) domain-containing protein.
    
  0.546
SCE66067.1
Diguanylate cyclase (GGDEF) domain-containing protein.
     
 0.492
SCE86116.1
Pyruvate dehydrogenase E1 component beta subunit.
       0.470
SCE79266.1
Predicted ATPase.
     
 0.455
Your Current Organism:
Micromonospora saelicesensis
NCBI taxonomy Id: 285676
Other names: DSM 44871, JCM 16032, LMG 24056, LMG:24056, M. saelicesensis, Micromonospora saelicesensis Trujillo et al. 2007, Micromonospora sp. Lupac 06, Micromonospora sp. Lupac 07, Micromonospora sp. Lupac 09, strain Lupac 09
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