STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCE88678.1L-lysine 2,3-aminomutase. (468 aa)    
Predicted Functional Partners:
SCE88637.1
Beta-lysine 5,6-aminomutase beta subunit.
 
  
  0.986
SCE88647.1
Beta-lysine 5,6-aminomutase alpha subunit.
 
  
 0.985
SCE88667.1
L-erythro-3,5-diaminohexanoate dehydrogenase.
 
     0.903
SCE88628.1
3-aminobutyryl-CoA ammonia-lyase.
 
     0.892
SCE88618.1
Conserved hypothetical protein.
 
     0.796
SCE90257.1
Monoamine oxidase.
    
  0.716
SCF21105.1
Uncharacterized conserved protein, DUF849 family.
 
     0.707
SCE69376.1
Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate.
    
 0.628
SCE88656.1
Hypothetical protein.
       0.607
SCF41254.1
Methanogenic corrinoid protein MtbC1.
    
  0.602
Your Current Organism:
Micromonospora saelicesensis
NCBI taxonomy Id: 285676
Other names: DSM 44871, JCM 16032, LMG 24056, LMG:24056, M. saelicesensis, Micromonospora saelicesensis Trujillo et al. 2007, Micromonospora sp. Lupac 06, Micromonospora sp. Lupac 07, Micromonospora sp. Lupac 09, strain Lupac 09
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