STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCE89018.1Transcriptional regulatory protein, C terminal. (1094 aa)    
Predicted Functional Partners:
SCE89028.1
Hemerythrin HHE cation binding domain-containing protein.
 
     0.744
SCE75789.1
Signal transduction histidine kinase.
  
 0.591
SCF09367.1
Putative Ig domain-containing protein.
  
     0.591
SCF36910.1
Very-short-patch-repair endonuclease.
  
     0.540
SCF38351.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
   
 0.505
SCF02535.1
Signal transduction histidine kinase.
   
  0.441
SCF40648.1
Nicotinamide-nucleotide adenylyltransferase, NadR type; Manually curated.
   
    0.434
SCE66067.1
Diguanylate cyclase (GGDEF) domain-containing protein.
    
  0.429
SCF38555.1
Sugar-specific transcriptional regulator TrmB.
    
 
 0.418
SCE89006.1
Hypothetical protein.
       0.406
Your Current Organism:
Micromonospora saelicesensis
NCBI taxonomy Id: 285676
Other names: DSM 44871, JCM 16032, LMG 24056, LMG:24056, M. saelicesensis, Micromonospora saelicesensis Trujillo et al. 2007, Micromonospora sp. Lupac 06, Micromonospora sp. Lupac 07, Micromonospora sp. Lupac 09, strain Lupac 09
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