STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCE92415.1Hypothetical protein. (929 aa)    
Predicted Functional Partners:
SCF44661.1
Competence protein ComEC.
  
  
 0.685
SCF41273.1
Hypothetical protein.
   
 0.662
SCE92426.1
Hypothetical protein.
       0.623
SCE92436.1
Hypothetical protein.
       0.623
SCF44666.1
Competence protein ComEA.
   
  
 0.534
SCE75789.1
Signal transduction histidine kinase.
    
 0.530
SCF01805.1
DNA processing protein.
  
  
 0.529
SCE76692.1
Leader peptidase (prepilin peptidase) / N-methyltransferase; Belongs to the peptidase A24 family.
  
  
 0.459
SCE80585.1
Leader peptidase (prepilin peptidase) / N-methyltransferase.
  
  
 0.459
SCE92448.1
Predicted ATPase.
       0.434
Your Current Organism:
Micromonospora saelicesensis
NCBI taxonomy Id: 285676
Other names: DSM 44871, JCM 16032, LMG 24056, LMG:24056, M. saelicesensis, Micromonospora saelicesensis Trujillo et al. 2007, Micromonospora sp. Lupac 06, Micromonospora sp. Lupac 07, Micromonospora sp. Lupac 09, strain Lupac 09
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.