STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCE92825.1Hypothetical protein. (120 aa)    
Predicted Functional Partners:
SCE92806.1
Protocatechuate 4,5-dioxygenase, beta chain.
 
     0.959
SCE92792.1
Citrate synthase.
 
     0.943
SCE92840.1
NADPH:quinone reductase.
 
     0.932
SCE92764.1
Cytosine/adenosine deaminase.
 
     0.881
SCE92776.1
Crotonobetainyl-CoA:carnitine CoA-transferase CaiB; Belongs to the CoA-transferase III family.
 
     0.776
SCE92751.1
Transcriptional regulator, IclR family.
 
     0.739
SCE92854.1
Aldehyde dehydrogenase (NAD+).
       0.547
SCF36910.1
Very-short-patch-repair endonuclease.
  
     0.458
SCE92738.1
Protein of unknown function (DUF664).
 
     0.448
SCF13441.1
Helix-turn-helix domain-containing protein.
  
     0.440
Your Current Organism:
Micromonospora saelicesensis
NCBI taxonomy Id: 285676
Other names: DSM 44871, JCM 16032, LMG 24056, LMG:24056, M. saelicesensis, Micromonospora saelicesensis Trujillo et al. 2007, Micromonospora sp. Lupac 06, Micromonospora sp. Lupac 07, Micromonospora sp. Lupac 09, strain Lupac 09
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.