Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SCF04830.1Transcriptional regulator, ArsR family. (112 aa)    
Predicted Functional Partners:
SCF04818.1
Uncharacterized conserved protein YndB, AHSA1/START domain.
    0.978
SCF04804.1
Dihydrofolate reductase.
 
     0.807
SCE90413.1
Transcriptional regulator, ArsR family.
  
     0.758
SCF04226.1
Uncharacterized conserved protein YndB, AHSA1/START domain; Manually curated.
 
    0.735
SCE88313.1
Uncharacterized conserved protein YndB, AHSA1/START domain.
 
    0.532
SCF35815.1
Transcriptional regulator, ArsR family.
  
    0.478
SCF04844.1
Hypothetical protein.
       0.470
Your Current Organism:
Micromonospora saelicesensis
NCBI taxonomy Id: 285676
Other names: DSM 44871, JCM 16032, LMG 24056, LMG:24056, M. saelicesensis, Micromonospora saelicesensis Trujillo et al. 2007, Micromonospora sp. Lupac 06, Micromonospora sp. Lupac 07, Micromonospora sp. Lupac 09, strain Lupac 09
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.