STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCF05925.1ABC-2 type transport system permease protein. (258 aa)    
Predicted Functional Partners:
SCF05936.1
ABC-2 type transport system ATP-binding protein.
 
     0.915
SCF30086.1
ABC-2 family transporter protein.
  
  0.612
SCF09633.1
ABC-2 family transporter protein.
  
  0.601
SCE64404.1
ABC-2 family transporter protein.
   
  0.547
SCF21702.1
ABC-2 type transport system permease protein.
   
  0.547
SCF21964.1
ABC-2 family transporter protein.
   
  0.547
SCF34656.1
ABC-2 type transport system permease protein.
   
  0.547
SCF05951.1
Peptidoglycan/xylan/chitin deacetylase, PgdA/CDA1 family.
       0.542
SCF05965.1
Cytochrome P450.
   
  0.541
SCE65414.1
ABC-type transport system involved in multi-copper enzyme maturation, permease component.
   
  0.539
Your Current Organism:
Micromonospora saelicesensis
NCBI taxonomy Id: 285676
Other names: DSM 44871, JCM 16032, LMG 24056, LMG:24056, M. saelicesensis, Micromonospora saelicesensis Trujillo et al. 2007, Micromonospora sp. Lupac 06, Micromonospora sp. Lupac 07, Micromonospora sp. Lupac 09, strain Lupac 09
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