STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCF29893.1RNA polymerase sigma-70 factor, sigma-E family; Belongs to the sigma-70 factor family. ECF subfamily. (166 aa)    
Predicted Functional Partners:
SCF29885.1
Hypothetical protein.
       0.773
SCF05552.1
Sigma-70 region 2; Belongs to the sigma-70 factor family.
  
     0.589
SCF20466.1
Hypothetical protein.
    
   0.569
SCF09367.1
Putative Ig domain-containing protein.
   
   0.555
SCE71414.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.549
SCE82131.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.470
SCF29900.1
Hypothetical protein.
       0.465
SCF29907.1
Beta-lactamase class A.
       0.465
SCF20455.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.442
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.414
Your Current Organism:
Micromonospora saelicesensis
NCBI taxonomy Id: 285676
Other names: DSM 44871, JCM 16032, LMG 24056, LMG:24056, M. saelicesensis, Micromonospora saelicesensis Trujillo et al. 2007, Micromonospora sp. Lupac 06, Micromonospora sp. Lupac 07, Micromonospora sp. Lupac 09, strain Lupac 09
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