STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCF32156.1Serine phosphatase RsbU, regulator of sigma subunit. (376 aa)    
Predicted Functional Partners:
SCE75800.1
Serine phosphatase RsbU, regulator of sigma subunit.
 
 0.842
SCF32149.1
DNA-binding transcriptional regulator, MarR family.
 
    0.776
SCE74308.1
Anti-sigma B factor antagonist; Belongs to the anti-sigma-factor antagonist family.
  
  0.741
SCF41247.1
Serine phosphatase RsbU, regulator of sigma subunit.
  
     0.721
SCF36016.1
Signal transduction histidine kinase.
  
 0.720
SCE76030.1
Anti-anti-sigma factor; Belongs to the anti-sigma-factor antagonist family.
  
  0.714
SCE75789.1
Signal transduction histidine kinase.
  
 
 0.695
SCF12569.1
Serine phosphatase RsbU, regulator of sigma subunit.
  
 
  0.688
SCF28068.1
Stage II sporulation protein E (SpoIIE).
  
     0.682
SCF38351.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
 
 0.665
Your Current Organism:
Micromonospora saelicesensis
NCBI taxonomy Id: 285676
Other names: DSM 44871, JCM 16032, LMG 24056, LMG:24056, M. saelicesensis, Micromonospora saelicesensis Trujillo et al. 2007, Micromonospora sp. Lupac 06, Micromonospora sp. Lupac 07, Micromonospora sp. Lupac 09, strain Lupac 09
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