STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCF34773.1Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily. (343 aa)    
Predicted Functional Partners:
SCF34762.1
Oligopeptide transport system permease protein.
 
  0.988
SCF34754.1
Oligopeptide transport system permease protein.
 
 
  0.986
SCF23872.1
Peptide/nickel transport system permease protein.
 
  0.971
SCE96535.1
Peptide/nickel transport system ATP-binding protein.
 
 
0.964
SCF34900.1
Oligopeptide transport system permease protein.
 
  0.954
SCE94332.1
Peptide/nickel transport system permease protein.
 
  0.950
SCE96512.1
Peptide/nickel transport system permease protein.
 
  0.949
SCF34908.1
Oligopeptide transport system permease protein.
 
 
  0.943
SCF34747.1
Oligopeptide transport system substrate-binding protein.
 
 
 0.942
SCF34244.1
Peptide/nickel transport system permease protein.
 
  0.929
Your Current Organism:
Micromonospora saelicesensis
NCBI taxonomy Id: 285676
Other names: DSM 44871, JCM 16032, LMG 24056, LMG:24056, M. saelicesensis, Micromonospora saelicesensis Trujillo et al. 2007, Micromonospora sp. Lupac 06, Micromonospora sp. Lupac 07, Micromonospora sp. Lupac 09, strain Lupac 09
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.