STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCF41698.1Transcriptional regulator, TetR family. (217 aa)    
Predicted Functional Partners:
SCE91408.1
Transcriptional regulator, TetR family.
  
     0.750
SCF10016.1
Transcriptional regulator, TetR family.
  
     0.710
SCF12902.1
Transcriptional regulator, TetR family.
  
     0.684
SCE79658.1
Transcriptional regulator, TetR family.
  
     0.650
SCF41692.1
TIGR03083 family protein.
 
     0.605
SCF41703.1
Hypothetical protein.
       0.497
SCE90429.1
Uncharacterized conserved protein YndB, AHSA1/START domain.
  
     0.418
Your Current Organism:
Micromonospora saelicesensis
NCBI taxonomy Id: 285676
Other names: DSM 44871, JCM 16032, LMG 24056, LMG:24056, M. saelicesensis, Micromonospora saelicesensis Trujillo et al. 2007, Micromonospora sp. Lupac 06, Micromonospora sp. Lupac 07, Micromonospora sp. Lupac 09, strain Lupac 09
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.