STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PISL3812_06583E3 ubiquitin-protein ligase listerin. (2162 aa)    
Predicted Functional Partners:
PISL3812_01827
Nuclear export mediator factor NEMF.
    
 
 0.954
PISL3812_02161
60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family.
    
   0.821
PISL3812_05576
60S ribosomal protein L25.
    
 
 0.806
PISL3812_07320
Ubiquitin-60S ribosomal protein L40.
    
  0.792
PISL3812_04116
60S ribosomal protein L2.
    
   0.788
PISL3812_05029
60S ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.
    
 
 0.782
PISL3812_02846
60S ribosomal protein L16; Belongs to the universal ribosomal protein uL13 family.
    
   0.773
PISL3812_02663
60S ribosomal protein L9-B.
   
   0.755
PISL3812_01046
60S ribosomal protein L32.
    
   0.751
PISL3812_05043
Large subunit ribosomal protein L38e; Belongs to the eukaryotic ribosomal protein eL38 family.
    
   0.751
Your Current Organism:
Talaromyces islandicus
NCBI taxonomy Id: 28573
Other names: ATCC 10127, CBS 338.48, IMI 040042, MUCL 31324, Penicillium islandicum, T. islandicus, Talaromyces islandicus (Sopp) Samson, Yilmaz, Frisvad & Seifert 2012
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