STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PISL3812_065995'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. May promote termination of transcription by RNA polymerase II. (1043 aa)    
Predicted Functional Partners:
PISL3812_05792
Decapping nuclease rai1.
   
 
 0.988
PISL3812_04411
5'-3' exoribonuclease 1.
  
 
0.973
PISL3812_00481
UPF0400 protein.
    
 
 0.959
PISL3812_00848
Uncharacterized protein; Belongs to the DEAD box helicase family.
   
 0.812
PISL3812_07771
U3 small nucleolar RNA-associated protein 20.
   
  0.803
PISL3812_07912
U3 small nucleolar RNA-associated protein 10.
   
 
  0.797
PISL3812_01303
Ribosome biogenesis protein BMS1.
   
 
 0.785
PISL3812_01092
rRNA biogenesis protein rrp5.
   
 0.783
PISL3812_09247
Nucleolar protein 14.
   
  0.782
PISL3812_08584
Uncharacterized protein.
   
  0.762
Your Current Organism:
Talaromyces islandicus
NCBI taxonomy Id: 28573
Other names: ATCC 10127, CBS 338.48, IMI 040042, MUCL 31324, Penicillium islandicum, T. islandicus, Talaromyces islandicus (Sopp) Samson, Yilmaz, Frisvad & Seifert 2012
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