SeMB42_g07930 protein (Synchytrium endobioticum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SeMB42_g07930

BTB domain-containing protein. (297 aa)

Predicted Functional Partners:

SeMB42_g01849

0.804

SeMB42_g01414

0.804

SeMB42_g02054

0.765

SeMB42_g00211

0.673

SeMB42_g04735

0.668

KATNAL2

0.662

SeMB42_g01487

0.654

SeMB42_g05136

0.651

SeMB42_g03467

0.651

KATNA1

0.649

Your Current Organism:

Synchytrium endobioticum

NCBI taxonomy Id: 286115
Other names: S. endobioticum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KATNA1	KATNAL2	A0A507D4R4	A0A507CI73	Katanin p60 ATPase-containing subunit A1; Severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays.	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	0.588
KATNA1	SeMB42_g01414	A0A507D4R4	A0A507DNI7	Katanin p60 ATPase-containing subunit A1; Severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.673
KATNA1	SeMB42_g01487	A0A507D4R4	A0A507DM93	Katanin p60 ATPase-containing subunit A1; Severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays.	Ubiquitin-like domain-containing protein.	0.698
KATNA1	SeMB42_g01849	A0A507D4R4	A0A507DJ43	Katanin p60 ATPase-containing subunit A1; Severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.673
KATNA1	SeMB42_g02054	A0A507D4R4	A0A507DHC8	Katanin p60 ATPase-containing subunit A1; Severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays.	Cullin domain-containing protein; Belongs to the cullin family.	0.654
KATNA1	SeMB42_g04735	A0A507D4R4	A0A507CW73	Katanin p60 ATPase-containing subunit A1; Severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays.	RING-type domain-containing protein.	0.573
KATNA1	SeMB42_g07930	A0A507D4R4	A0A507BHK2	Katanin p60 ATPase-containing subunit A1; Severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays.	BTB domain-containing protein.	0.649
KATNAL2	KATNA1	A0A507CI73	A0A507D4R4	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	Katanin p60 ATPase-containing subunit A1; Severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays.	0.588
KATNAL2	SeMB42_g00211	A0A507CI73	A0A507D8X3	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.681
KATNAL2	SeMB42_g01414	A0A507CI73	A0A507DNI7	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.989
KATNAL2	SeMB42_g01487	A0A507CI73	A0A507DM93	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	Ubiquitin-like domain-containing protein.	0.922
KATNAL2	SeMB42_g01849	A0A507CI73	A0A507DJ43	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.989
KATNAL2	SeMB42_g02054	A0A507CI73	A0A507DHC8	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	Cullin domain-containing protein; Belongs to the cullin family.	0.989
KATNAL2	SeMB42_g03467	A0A507CI73	A0A507D8B8	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.599
KATNAL2	SeMB42_g04735	A0A507CI73	A0A507CW73	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	RING-type domain-containing protein.	0.977
KATNAL2	SeMB42_g05136	A0A507CI73	A0A507CGU2	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.598
KATNAL2	SeMB42_g07930	A0A507CI73	A0A507BHK2	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	BTB domain-containing protein.	0.662
SeMB42_g00211	KATNAL2	A0A507D8X3	A0A507CI73	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	0.681
SeMB42_g00211	SeMB42_g01414	A0A507D8X3	A0A507DNI7	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.746
SeMB42_g00211	SeMB42_g01487	A0A507D8X3	A0A507DM93	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	Ubiquitin-like domain-containing protein.	0.818