STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SeMB42_g07953Threonine---tRNA ligase. (365 aa)    
Predicted Functional Partners:
SeMB42_g02276
RWD domain-containing protein.
   
 
 0.991
SeMB42_g05271
Uncharacterized protein.
   
 
 0.919
SeMB42_g02086
KH type-2 domain-containing protein; Belongs to the universal ribosomal protein uS3 family.
   
   0.821
SeMB42_g01245
Uncharacterized protein.
   
   0.804
SeMB42_g04445
Ribosomal_L18e/L15P domain-containing protein; Belongs to the universal ribosomal protein uL15 family.
   
 
 0.788
SeMB42_g04660
S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.
   
   0.787
SeMB42_g06431
Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.
   
   0.787
SeMB42_g02884
Ribosomal_S10 domain-containing protein.
   
   0.786
SeMB42_g00134
Ribosomal_L18_c domain-containing protein.
   
   0.766
SeMB42_g07942
Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.
    
   0.758
Your Current Organism:
Synchytrium endobioticum
NCBI taxonomy Id: 286115
Other names: S. endobioticum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.