STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SeMB42_g06983Uncharacterized protein. (690 aa)    
Predicted Functional Partners:
SeMB42_g06982
ABC transmembrane type-1 domain-containing protein.
 
    
0.919
KATNAL2
Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.
  
 0.775
SeMB42_g06063
Ubiquitin carboxyl-terminal hydrolase.
    
  0.712
SeMB42_g00914
Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.
    
  0.681
SeMB42_g06370
RING-type domain-containing protein.
    
 0.664
SeMB42_g06094
Cyclic nucleotide-binding domain-containing protein.
    
 0.662
SeMB42_g07730
MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.
    
  0.653
SeMB42_g01896
Uncharacterized protein.
   
 0.653
SeMB42_g00571
ANK_REP_REGION domain-containing protein.
   
 0.653
SeMB42_g07085
Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.
    
  0.649
Your Current Organism:
Synchytrium endobioticum
NCBI taxonomy Id: 286115
Other names: S. endobioticum
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