SeMB42_g07311 protein (Synchytrium endobioticum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SeMB42_g07311

Uncharacterized protein. (918 aa)

Predicted Functional Partners:

SeMB42_g05783

0.756

SeMB42_g07274

0.732

SeMB42_g03176

0.732

SeMB42_g03861

0.732

SeMB42_g01199

0.713

SeMB42_g02835

0.683

SeMB42_g05727

0.638

SeMB42_g06809

0.611

SeMB42_g02084

0.611

SeMB42_g06282

0.599

Your Current Organism:

Synchytrium endobioticum

NCBI taxonomy Id: 286115
Other names: S. endobioticum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SeMB42_g01199	SeMB42_g07311	A0A507DNF8	A0A507C8Z9	Uncharacterized protein.	Uncharacterized protein.	0.713
SeMB42_g02084	SeMB42_g02835	A0A507DH71	A0A507DBF2	Uncharacterized protein.	Uncharacterized protein.	0.776
SeMB42_g02084	SeMB42_g03176	A0A507DH71	A0A507D115	Uncharacterized protein.	F-box domain-containing protein.	0.810
SeMB42_g02084	SeMB42_g03861	A0A507DH71	A0A507D3E1	Uncharacterized protein.	Uncharacterized protein.	0.810
SeMB42_g02084	SeMB42_g06282	A0A507DH71	A0A507CF16	Uncharacterized protein.	NodB homology domain-containing protein.	0.619
SeMB42_g02084	SeMB42_g07274	A0A507DH71	A0A507C5K1	Uncharacterized protein.	TRP domain-containing protein.	0.810
SeMB42_g02084	SeMB42_g07311	A0A507DH71	A0A507C8Z9	Uncharacterized protein.	Uncharacterized protein.	0.611
SeMB42_g02835	SeMB42_g02084	A0A507DBF2	A0A507DH71	Uncharacterized protein.	Uncharacterized protein.	0.776
SeMB42_g02835	SeMB42_g03176	A0A507DBF2	A0A507D115	Uncharacterized protein.	F-box domain-containing protein.	0.904
SeMB42_g02835	SeMB42_g03861	A0A507DBF2	A0A507D3E1	Uncharacterized protein.	Uncharacterized protein.	0.904
SeMB42_g02835	SeMB42_g05727	A0A507DBF2	A0A507CPP8	Uncharacterized protein.	Uncharacterized protein.	0.882
SeMB42_g02835	SeMB42_g05783	A0A507DBF2	A0A507CPE2	Uncharacterized protein.	Uncharacterized protein.	0.730
SeMB42_g02835	SeMB42_g06282	A0A507DBF2	A0A507CF16	Uncharacterized protein.	NodB homology domain-containing protein.	0.454
SeMB42_g02835	SeMB42_g06809	A0A507DBF2	A0A507CI93	Uncharacterized protein.	Uncharacterized protein.	0.776
SeMB42_g02835	SeMB42_g07274	A0A507DBF2	A0A507C5K1	Uncharacterized protein.	TRP domain-containing protein.	0.904
SeMB42_g02835	SeMB42_g07311	A0A507DBF2	A0A507C8Z9	Uncharacterized protein.	Uncharacterized protein.	0.683
SeMB42_g03176	SeMB42_g02084	A0A507D115	A0A507DH71	F-box domain-containing protein.	Uncharacterized protein.	0.810
SeMB42_g03176	SeMB42_g02835	A0A507D115	A0A507DBF2	F-box domain-containing protein.	Uncharacterized protein.	0.904
SeMB42_g03176	SeMB42_g05727	A0A507D115	A0A507CPP8	F-box domain-containing protein.	Uncharacterized protein.	0.758
SeMB42_g03176	SeMB42_g05783	A0A507D115	A0A507CPE2	F-box domain-containing protein.	Uncharacterized protein.	0.650