SeMB42_g07289 protein (Synchytrium endobioticum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SeMB42_g07289

Autophagy-related protein 3. (950 aa)

Predicted Functional Partners:

SeMB42_g02661

0.997

SeMB42_g02454

0.993

SeMB42_g03238

0.986

SeMB42_g01123

0.986

SeMB42_g02960

0.985

SeMB42_g00119

0.985

SeMB42_g05585

0.979

SeMB42_g03809

0.979

SeMB42_g03658

0.972

SeMB42_g00559

0.972

Your Current Organism:

Synchytrium endobioticum

NCBI taxonomy Id: 286115
Other names: S. endobioticum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SeMB42_g00119	SeMB42_g00559	A0A507DIW5	A0A507DRP2	Uncharacterized protein.	Uncharacterized protein.	0.973
SeMB42_g00119	SeMB42_g01123	A0A507DIW5	A0A507DMX8	Uncharacterized protein.	Protein kinase domain-containing protein.	0.998
SeMB42_g00119	SeMB42_g02454	A0A507DIW5	A0A507DBQ0	Uncharacterized protein.	Uncharacterized protein.	0.419
SeMB42_g00119	SeMB42_g02661	A0A507DIW5	A0A507DDD5	Uncharacterized protein.	Rab GDP dissociation inhibitor; Belongs to the Rab GDI family.	0.710
SeMB42_g00119	SeMB42_g02960	A0A507DIW5	A0A507DA77	Uncharacterized protein.	Uncharacterized protein.	0.998
SeMB42_g00119	SeMB42_g03238	A0A507DIW5	A0A507D8K3	Uncharacterized protein.	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	0.998
SeMB42_g00119	SeMB42_g03658	A0A507DIW5	A0A507D5H5	Uncharacterized protein.	Uncharacterized protein.	0.973
SeMB42_g00119	SeMB42_g03809	A0A507DIW5	A0A507D3Z4	Uncharacterized protein.	Uncharacterized protein.	0.999
SeMB42_g00119	SeMB42_g07289	A0A507DIW5	A0A507C9G2	Uncharacterized protein.	Autophagy-related protein 3.	0.985
SeMB42_g00559	SeMB42_g00119	A0A507DRP2	A0A507DIW5	Uncharacterized protein.	Uncharacterized protein.	0.973
SeMB42_g00559	SeMB42_g01123	A0A507DRP2	A0A507DMX8	Uncharacterized protein.	Protein kinase domain-containing protein.	0.973
SeMB42_g00559	SeMB42_g02661	A0A507DRP2	A0A507DDD5	Uncharacterized protein.	Rab GDP dissociation inhibitor; Belongs to the Rab GDI family.	0.636
SeMB42_g00559	SeMB42_g02960	A0A507DRP2	A0A507DA77	Uncharacterized protein.	Uncharacterized protein.	0.974
SeMB42_g00559	SeMB42_g03238	A0A507DRP2	A0A507D8K3	Uncharacterized protein.	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	0.975
SeMB42_g00559	SeMB42_g03809	A0A507DRP2	A0A507D3Z4	Uncharacterized protein.	Uncharacterized protein.	0.973
SeMB42_g00559	SeMB42_g07289	A0A507DRP2	A0A507C9G2	Uncharacterized protein.	Autophagy-related protein 3.	0.972
SeMB42_g01123	SeMB42_g00119	A0A507DMX8	A0A507DIW5	Protein kinase domain-containing protein.	Uncharacterized protein.	0.998
SeMB42_g01123	SeMB42_g00559	A0A507DMX8	A0A507DRP2	Protein kinase domain-containing protein.	Uncharacterized protein.	0.973
SeMB42_g01123	SeMB42_g02454	A0A507DMX8	A0A507DBQ0	Protein kinase domain-containing protein.	Uncharacterized protein.	0.468
SeMB42_g01123	SeMB42_g02661	A0A507DMX8	A0A507DDD5	Protein kinase domain-containing protein.	Rab GDP dissociation inhibitor; Belongs to the Rab GDI family.	0.721