STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SeMB42_g07158VWFA domain-containing protein. (775 aa)    
Predicted Functional Partners:
SeMB42_g02835
Uncharacterized protein.
    
 0.811
SeMB42_g03715
Uncharacterized protein.
    
 0.798
SeMB42_g00090
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
    
 0.797
SeMB42_g06306
SCA7 domain-containing protein.
    
  0.794
SeMB42_g02026
Transcription initiation factor TFIID subunit 10; Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modificati [...]
    
 0.790
GUK1-2
Guanylate kinase.
    
 0.781
SeMB42_g05386
Uncharacterized protein.
    
 0.769
SeMB42_g07906
WD_REPEATS_REGION domain-containing protein.
    
 0.759
SeMB42_g03083
WD_REPEATS_REGION domain-containing protein.
    
 0.759
SeMB42_g01765
WD_REPEATS_REGION domain-containing protein.
    
 0.757
Your Current Organism:
Synchytrium endobioticum
NCBI taxonomy Id: 286115
Other names: S. endobioticum
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