STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SeMB42_g07191Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (163 aa)    
Predicted Functional Partners:
SeMB42_g01664
WD_REPEATS_REGION domain-containing protein.
    
 0.997
SeMB42_g02691
SKIP_SNW domain-containing protein.
    
 0.995
SeMB42_g05512
Uncharacterized protein.
    
 
 0.984
SeMB42_g01269
Uncharacterized protein.
  
0.982
SeMB42_g06567
PWI domain-containing protein.
    
 0.981
SeMB42_g05697
MI domain-containing protein.
   
 0.980
SeMB42_g02582
Uncharacterized protein.
    
 0.975
SeMB42_g05590
DTW domain-containing protein.
   
 0.971
SeMB42_g07057
C3H1-type domain-containing protein.
   
  0.970
SeMB42_g03327
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
  
 
0.970
Your Current Organism:
Synchytrium endobioticum
NCBI taxonomy Id: 286115
Other names: S. endobioticum
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