STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SeMB42_g07173Copper-fist domain-containing protein. (588 aa)    
Predicted Functional Partners:
SeMB42_g01765
WD_REPEATS_REGION domain-containing protein.
   
 0.869
SeMB42_g05201
Uncharacterized protein; Belongs to the calmodulin family.
    
 0.855
SeMB42_g05133
Ipi1_N domain-containing protein.
   
 0.840
SeMB42_g02632
Uncharacterized protein.
   
 0.783
ERB1
Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
 0.761
SeMB42_g04285
CP-type G domain-containing protein.
   
  0.743
SeMB42_g02350
Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
   
 0.743
SeMB42_g02489
CLP1_P domain-containing protein.
   
 0.735
SeMB42_g06719
Uncharacterized protein; Belongs to the universal ribosomal protein uS11 family.
   
  0.734
SeMB42_g06510
Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.
   
 0.731
Your Current Organism:
Synchytrium endobioticum
NCBI taxonomy Id: 286115
Other names: S. endobioticum
Server load: low (30%) [HD]