SeMB42_g06758 protein (Synchytrium endobioticum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SeMB42_g06758

Uncharacterized protein. (619 aa)

Predicted Functional Partners:

SeMB42_g05649

0.916

SeMB42_g05406

0.867

SeMB42_g06219

0.649

SeMB42_g05024

0.649

SeMB42_g04063

0.649

SeMB42_g02780

0.601

SeMB42_g05061

0.599

SeMB42_g05062

0.599

SeMB42_g05060

0.599

SeMB42_g01995

0.599

Your Current Organism:

Synchytrium endobioticum

NCBI taxonomy Id: 286115
Other names: S. endobioticum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SeMB42_g01995	SeMB42_g05406	A0A507DI29	A0A507CRM1	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.998
SeMB42_g01995	SeMB42_g06758	A0A507DI29	A0A507CFF1	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	Uncharacterized protein.	0.599
SeMB42_g02780	SeMB42_g05406	A0A507D403	A0A507CRM1	CS domain-containing protein.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.456
SeMB42_g02780	SeMB42_g06758	A0A507D403	A0A507CFF1	CS domain-containing protein.	Uncharacterized protein.	0.601
SeMB42_g04063	SeMB42_g06758	A0A507D1Q9	A0A507CFF1	Uncharacterized protein.	Uncharacterized protein.	0.649
SeMB42_g05024	SeMB42_g06758	A0A507CU24	A0A507CFF1	Myb_DNA-bind_2 domain-containing protein.	Uncharacterized protein.	0.649
SeMB42_g05060	SeMB42_g05406	A0A507CU43	A0A507CRM1	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.973
SeMB42_g05060	SeMB42_g06758	A0A507CU43	A0A507CFF1	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	Uncharacterized protein.	0.599
SeMB42_g05061	SeMB42_g05406	A0A507CTV1	A0A507CRM1	Uncharacterized protein; Belongs to the tubulin family.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.971
SeMB42_g05061	SeMB42_g06758	A0A507CTV1	A0A507CFF1	Uncharacterized protein; Belongs to the tubulin family.	Uncharacterized protein.	0.599
SeMB42_g05062	SeMB42_g05406	A0A507CU13	A0A507CRM1	Uncharacterized protein; Belongs to the tubulin family.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.972
SeMB42_g05062	SeMB42_g06758	A0A507CU13	A0A507CFF1	Uncharacterized protein; Belongs to the tubulin family.	Uncharacterized protein.	0.599
SeMB42_g05406	SeMB42_g01995	A0A507CRM1	A0A507DI29	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	0.998
SeMB42_g05406	SeMB42_g02780	A0A507CRM1	A0A507D403	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	CS domain-containing protein.	0.456
SeMB42_g05406	SeMB42_g05060	A0A507CRM1	A0A507CU43	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	0.973
SeMB42_g05406	SeMB42_g05061	A0A507CRM1	A0A507CTV1	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Uncharacterized protein; Belongs to the tubulin family.	0.971
SeMB42_g05406	SeMB42_g05062	A0A507CRM1	A0A507CU13	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Uncharacterized protein; Belongs to the tubulin family.	0.972
SeMB42_g05406	SeMB42_g06758	A0A507CRM1	A0A507CFF1	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Uncharacterized protein.	0.867
SeMB42_g05649	SeMB42_g06758	A0A507CQ44	A0A507CFF1	Uncharacterized protein.	Uncharacterized protein.	0.916
SeMB42_g06219	SeMB42_g06758	A0A507CLW0	A0A507CFF1	SH3 domain-containing protein.	Uncharacterized protein.	0.649