STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SeMB42_g06757Uncharacterized protein. (198 aa)    
Predicted Functional Partners:
SeMB42_g02282
Uncharacterized protein.
  
  
 0.950
SeMB42_g02948
RNase H domain-containing protein.
   
 
 0.869
SeMB42_g03969
DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family.
  
 
 0.852
SeMB42_g04532
Uncharacterized protein.
   
   0.828
SeMB42_g02884
Ribosomal_S10 domain-containing protein.
   
 
 0.787
SeMB42_g06510
Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.
   
  
 0.775
SeMB42_g02643
Ribosomal_S10 domain-containing protein.
   
 
 0.768
SeMB42_g04066
Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.
  
 
 0.740
SeMB42_g06432
S1-like domain-containing protein; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.
  
  
 0.734
SeMB42_g04965
Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.
  
 
 0.717
Your Current Organism:
Synchytrium endobioticum
NCBI taxonomy Id: 286115
Other names: S. endobioticum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.