STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SeMB42_g07034PHB domain-containing protein. (424 aa)    
Predicted Functional Partners:
SeMB42_g07188
Uncharacterized protein.
  
 0.854
SeMB42_g05653
Uncharacterized protein.
  
 0.810
SeMB42_g03347
F-box domain-containing protein.
  
 0.810
SeMB42_g02431
AAA domain-containing protein.
  
 0.810
SeMB42_g06252
Rhomboid domain-containing protein.
  
 0.796
SeMB42_g05543
Rhomboid domain-containing protein.
  
 0.698
SeMB42_g06472
Peptidase_M16 domain-containing protein.
  
 0.692
SeMB42_g00115
Uncharacterized protein; Belongs to the peptidase M16 family.
  
 0.692
SeMB42_g04524
Ribosomal_S7 domain-containing protein.
  
 
 0.691
SeMB42_g06839
14_3_3 domain-containing protein; Belongs to the 14-3-3 family.
    
 0.683
Your Current Organism:
Synchytrium endobioticum
NCBI taxonomy Id: 286115
Other names: S. endobioticum
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