STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SeMB42_g06037Uncharacterized protein. (102 aa)    
Predicted Functional Partners:
GUK1-2
Guanylate kinase.
    
 
 0.948
SeMB42_g01884
Uncharacterized protein.
    
 
 0.760
PGK1
Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
    
 
 0.714
SeMB42_g04717
Uncharacterized protein.
    
 
 0.701
SeMB42_g00660
Uncharacterized protein.
    
 
 0.676
SeMB42_g02406
Uncharacterized protein.
    
 
 0.649
SeMB42_g07936
RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.648
SeMB42_g06903
Uncharacterized protein.
    
 
 0.648
SeMB42_g05406
Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.
    
   0.648
SeMB42_g05107
Myotubularin phosphatase domain-containing protein.
    
   0.648
Your Current Organism:
Synchytrium endobioticum
NCBI taxonomy Id: 286115
Other names: S. endobioticum
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