SeMB42_g06387 protein (Synchytrium endobioticum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SeMB42_g06387

Uncharacterized protein; Belongs to the multicopper oxidase family. (606 aa)

Predicted Functional Partners:

SeMB42_g04478

0.691

SeMB42_g05727

0.676

SeMB42_g03028

0.670

SeMB42_g06698

0.609

SeMB42_g07433

0.606

SeMB42_g06343

0.599

SeMB42_g07029

0.591

SeMB42_g05371

0.591

SeMB42_g06121

0.591

SeMB42_g00270

0.591

Your Current Organism:

Synchytrium endobioticum

NCBI taxonomy Id: 286115
Other names: S. endobioticum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SeMB42_g00270	SeMB42_g05727	A0A507DUA6	A0A507CPP8	Protein arginine methyltransferase NDUFAF7; Arginine methyltransferase involved in the assembly or stability of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).	Uncharacterized protein.	0.616
SeMB42_g00270	SeMB42_g06387	A0A507DUA6	A0A507CLS5	Protein arginine methyltransferase NDUFAF7; Arginine methyltransferase involved in the assembly or stability of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).	Uncharacterized protein; Belongs to the multicopper oxidase family.	0.591
SeMB42_g03028	SeMB42_g05727	A0A507D9Y8	A0A507CPP8	Uncharacterized protein.	Uncharacterized protein.	0.569
SeMB42_g03028	SeMB42_g06387	A0A507D9Y8	A0A507CLS5	Uncharacterized protein.	Uncharacterized protein; Belongs to the multicopper oxidase family.	0.670
SeMB42_g04478	SeMB42_g05727	A0A507CYK7	A0A507CPP8	Uncharacterized protein.	Uncharacterized protein.	0.616
SeMB42_g04478	SeMB42_g06387	A0A507CYK7	A0A507CLS5	Uncharacterized protein.	Uncharacterized protein; Belongs to the multicopper oxidase family.	0.691
SeMB42_g05371	SeMB42_g05727	A0A507CRW5	A0A507CPP8	Pectinesterase.	Uncharacterized protein.	0.616
SeMB42_g05371	SeMB42_g06387	A0A507CRW5	A0A507CLS5	Pectinesterase.	Uncharacterized protein; Belongs to the multicopper oxidase family.	0.591
SeMB42_g05727	SeMB42_g00270	A0A507CPP8	A0A507DUA6	Uncharacterized protein.	Protein arginine methyltransferase NDUFAF7; Arginine methyltransferase involved in the assembly or stability of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).	0.616
SeMB42_g05727	SeMB42_g03028	A0A507CPP8	A0A507D9Y8	Uncharacterized protein.	Uncharacterized protein.	0.569
SeMB42_g05727	SeMB42_g04478	A0A507CPP8	A0A507CYK7	Uncharacterized protein.	Uncharacterized protein.	0.616
SeMB42_g05727	SeMB42_g05371	A0A507CPP8	A0A507CRW5	Uncharacterized protein.	Pectinesterase.	0.616
SeMB42_g05727	SeMB42_g06121	A0A507CPP8	A0A507D249	Uncharacterized protein.	Uncharacterized protein.	0.616
SeMB42_g05727	SeMB42_g06343	A0A507CPP8	A0A507CEL4	Uncharacterized protein.	PB1 domain-containing protein.	0.691
SeMB42_g05727	SeMB42_g06387	A0A507CPP8	A0A507CLS5	Uncharacterized protein.	Uncharacterized protein; Belongs to the multicopper oxidase family.	0.676
SeMB42_g05727	SeMB42_g07029	A0A507CPP8	A0A507CGZ9	Uncharacterized protein.	BRCT domain-containing protein.	0.616
SeMB42_g06121	SeMB42_g05727	A0A507D249	A0A507CPP8	Uncharacterized protein.	Uncharacterized protein.	0.616
SeMB42_g06121	SeMB42_g06387	A0A507D249	A0A507CLS5	Uncharacterized protein.	Uncharacterized protein; Belongs to the multicopper oxidase family.	0.591
SeMB42_g06343	SeMB42_g05727	A0A507CEL4	A0A507CPP8	PB1 domain-containing protein.	Uncharacterized protein.	0.691
SeMB42_g06343	SeMB42_g06387	A0A507CEL4	A0A507CLS5	PB1 domain-containing protein.	Uncharacterized protein; Belongs to the multicopper oxidase family.	0.599