STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SeMB42_g06170Rtt106 domain-containing protein. (398 aa)    
Predicted Functional Partners:
SeMB42_g00609
Uncharacterized protein.
    
   0.906
SeMB42_g01474
WD_REPEATS_REGION domain-containing protein.
    
 
 0.857
SeMB42_g01497
SPX domain-containing protein.
   
 0.827
SeMB42_g05959
GP-PDE domain-containing protein.
   
 0.816
SeMB42_g06703
Uncharacterized protein.
    
 
 0.714
SeMB42_g01113
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
   
 
 0.707
SeMB42_g00998
AB hydrolase-1 domain-containing protein.
     
 0.683
SeMB42_g04561
AB hydrolase-1 domain-containing protein.
     
 0.680
SeMB42_g03397
WD_REPEATS_REGION domain-containing protein.
   
 
 0.660
SeMB42_g03046
Histone domain-containing protein.
   
 
 0.631
Your Current Organism:
Synchytrium endobioticum
NCBI taxonomy Id: 286115
Other names: S. endobioticum
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.