STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SeMB42_g06046NUC153 domain-containing protein. (721 aa)    
Predicted Functional Partners:
SeMB42_g00335
RNA helicase.
   
 
 0.995
SeMB42_g07052
Uncharacterized protein.
   
 
 0.989
SeMB42_g03163
U3 small nucleolar RNA-associated protein 22.
   
 
 0.988
SeMB42_g06444
Uncharacterized protein.
   
 
 0.985
NAT10
RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.
   
 
 0.980
SeMB42_g07860
RRM domain-containing protein.
   
 
 0.974
SeMB42_g00979
RNA helicase.
   
 
 0.965
SeMB42_g01779
MI domain-containing protein.
   
   0.963
SeMB42_g06555
NUC153 domain-containing protein.
   
 
 0.950
SeMB42_g02739
KH domain-containing protein.
   
 
 0.949
Your Current Organism:
Synchytrium endobioticum
NCBI taxonomy Id: 286115
Other names: S. endobioticum
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