STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SeMB42_g05863Uncharacterized protein. (1819 aa)    
Predicted Functional Partners:
SeMB42_g04212
Fibronectin type-III domain-containing protein.
   
 0.938
SeMB42_g06390
Ubiquitin carboxyl-terminal hydrolase.
    
 0.875
SeMB42_g03912
Glycogen [starch] synthase; Transfers the glycosyl residue from UDP-Glc to the non- reducing end of alpha-1,4-glucan.
    
 0.792
SeMB42_g06152
Uncharacterized protein.
    
 0.789
SeMB42_g05232
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
   
 0.785
SeMB42_g07257
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
   
 
 0.776
SeMB42_g05988
WD_REPEATS_REGION domain-containing protein.
   
 0.692
SeMB42_g04690
WD_REPEATS_REGION domain-containing protein.
   
 0.692
SeMB42_g00492
WD_REPEATS_REGION domain-containing protein.
   
 0.692
SeMB42_g00585
WD_REPEATS_REGION domain-containing protein.
   
 0.692
Your Current Organism:
Synchytrium endobioticum
NCBI taxonomy Id: 286115
Other names: S. endobioticum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.