STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SeMB42_g05852E3 ubiquitin-protein ligase. (831 aa)    
Predicted Functional Partners:
SeMB42_g01487
Ubiquitin-like domain-containing protein.
    
 0.962
SeMB42_g02073
Uncharacterized protein.
    
 0.915
SeMB42_g02072
Uncharacterized protein.
    
 0.915
SeMB42_g01300
VWFA domain-containing protein.
    
 0.913
SeMB42_g04170
Uncharacterized protein.
    
 0.903
SeMB42_g03996
Ubiquitin-like domain-containing protein.
    
 0.903
SENM603
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.887
SeMB42_g06839
14_3_3 domain-containing protein; Belongs to the 14-3-3 family.
    
 0.847
SeMB42_g05225
AN1-type domain-containing protein.
    
 0.846
SeMB42_g00942
Arrestin_C domain-containing protein.
    
 
 0.844
Your Current Organism:
Synchytrium endobioticum
NCBI taxonomy Id: 286115
Other names: S. endobioticum
Server load: low (30%) [HD]