STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SeMB42_g05835Reverse transcriptase domain-containing protein. (687 aa)    
Predicted Functional Partners:
SeMB42_g01497
SPX domain-containing protein.
    
 0.892
SeMB42_g05959
GP-PDE domain-containing protein.
    
 0.854
SeMB42_g01480
Uncharacterized protein.
    
 0.810
SeMB42_g01487
Ubiquitin-like domain-containing protein.
    
  0.797
SeMB42_g06678
DH domain-containing protein.
    
 0.767
SeMB42_g03195
DH domain-containing protein.
    
 0.767
SeMB42_g04170
Uncharacterized protein.
    
  0.766
SeMB42_g03996
Ubiquitin-like domain-containing protein.
    
  0.766
SeMB42_g01426
Uncharacterized protein.
   
 0.744
SeMB42_g04468
L-lactate dehydrogenase.
    
 0.719
Your Current Organism:
Synchytrium endobioticum
NCBI taxonomy Id: 286115
Other names: S. endobioticum
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