STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SeMB42_g05765Uncharacterized protein. (238 aa)    
Predicted Functional Partners:
SeMB42_g03469
Uncharacterized protein.
  
0.999
SeMB42_g03456
S1 motif domain-containing protein.
   
 0.999
SeMB42_g03196
RNase_PH domain-containing protein.
  
0.999
SeMB42_g02230
Uncharacterized protein.
   
 0.999
SeMB42_g00277
RNase_PH domain-containing protein.
   
 0.999
SeMB42_g01231
Uncharacterized protein.
   
 0.997
SeMB42_g01544
DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'.
   
 0.997
SeMB42_g04519
Tr-type G domain-containing protein.
   
 0.983
SeMB42_g00667
TAF domain-containing protein.
   
 0.974
SeMB42_g03998
BP28CT domain-containing protein.
   
 0.973
Your Current Organism:
Synchytrium endobioticum
NCBI taxonomy Id: 286115
Other names: S. endobioticum
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