STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SeMB42_g05381Alpha-mann_mid domain-containing protein. (1075 aa)    
Predicted Functional Partners:
SeMB42_g00705
RING-type domain-containing protein.
     
 0.830
SeMB42_g04412
Uncharacterized protein.
   
 
 0.708
SeMB42_g07233
Uncharacterized protein; Belongs to the peptidase M18 family.
   
 
 0.567
CWH41
Mannosyl-oligosaccharide glucosidase.
   
  
 0.567
SeMB42_g01281
Uncharacterized protein.
     
 0.504
SeMB42_g07193
alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.
   
  
 0.494
CWH41-2
Mannosyl-oligosaccharide glucosidase.
   
  
 0.480
LIP2
Lipoyl(Octanoyl) transferase.
    
  0.479
SeMB42_g07236
XRN_N domain-containing protein.
    
   0.465
SeMB42_g01129
5'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins.
    
   0.465
Your Current Organism:
Synchytrium endobioticum
NCBI taxonomy Id: 286115
Other names: S. endobioticum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.