Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SeMB42_g05229Uncharacterized protein. (540 aa)    
Predicted Functional Partners:
TRP5
Tryptophan synthase.
     
  0.742
SeMB42_g02249
DNA-directed DNA polymerase.
 
     0.583
SeMB42_g02745
DNA-directed DNA polymerase.
  
     0.536
SENM926
DNA-directed DNA polymerase.
  
     0.536
SeMB42_g07168
DNA-directed DNA polymerase.
  
     0.535
SeMB42_g08029
DNA-directed DNA polymerase.
  
     0.532
SeMB42_g03397
WD_REPEATS_REGION domain-containing protein.
    
  0.530
SeMB42_g01046
Integrase catalytic domain-containing protein.
  
     0.528
SeMB42_g04387
DNA-directed DNA polymerase.
 
     0.526
SeMB42_g03625
Integrase catalytic domain-containing protein.
  
     0.526
Your Current Organism:
Synchytrium endobioticum
NCBI taxonomy Id: 286115
Other names: S. endobioticum
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