STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SeMB42_g05223Uncharacterized protein. (361 aa)    
Predicted Functional Partners:
TRP5
Tryptophan synthase.
  
 
 0.880
SeMB42_g04419
WD_REPEATS_REGION domain-containing protein.
    
 0.785
SeMB42_g07848
AMPK1_CBM domain-containing protein.
   
 0.775
SeMB42_g01981
AMPKBI domain-containing protein.
   
 0.775
SeMB42_g01199
Uncharacterized protein.
    
 0.751
SeMB42_g02679
Uncharacterized protein.
    
 
 0.728
SeMB42_g07842
Serine/threonine-protein phosphatase.
   
   0.662
SeMB42_g05439
MGS domain-containing protein.
  
 
 0.628
SeMB42_g01101
Glutamine amidotransferase type-1 domain-containing protein.
  
 
 0.623
SeMB42_g07174
Uncharacterized protein.
    
 0.618
Your Current Organism:
Synchytrium endobioticum
NCBI taxonomy Id: 286115
Other names: S. endobioticum
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