Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SeMB42_g05265Ribosomal_L28e domain-containing protein. (563 aa)    
Predicted Functional Partners:
SeMB42_g00811
Uncharacterized protein.
   
 0.997
SeMB42_g04268
Uncharacterized protein.
   
 0.996
SPB1
AdoMet-dependent rRNA methyltransferase SPB1; Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.
   
 0.995
SeMB42_g01705
Brix domain-containing protein.
   
 
 0.995
SeMB42_g00980
Brix domain-containing protein.
   
 0.995
SeMB42_g05840
RRM domain-containing protein.
   
 
 0.994
SeMB42_g04623
Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.
   
 
 0.994
SeMB42_g03785
TRASH domain-containing protein.
   
 
 0.994
SeMB42_g00245
Uncharacterized protein.
   
 0.993
SeMB42_g00938
Uncharacterized protein.
   
 0.992
Your Current Organism:
Synchytrium endobioticum
NCBI taxonomy Id: 286115
Other names: S. endobioticum
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