STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SeMB42_g05170Uncharacterized protein. (1126 aa)    
Predicted Functional Partners:
SeMB42_g01785
GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.
   
 0.968
SeMB42_g07044
Uncharacterized protein.
    
 
 0.933
SeMB42_g05933
Uncharacterized protein.
    
 
 0.911
SeMB42_g03360
TOG domain-containing protein.
   
 
0.887
SeMB42_g02447
Peptidase S59 domain-containing protein.
   
 0.869
SeMB42_g03469
Uncharacterized protein.
   
 
  0.747
SeMB42_g03456
S1 motif domain-containing protein.
   
 
  0.741
SeMB42_g05765
Uncharacterized protein.
   
 
  0.735
SeMB42_g02690
Importin N-terminal domain-containing protein.
   
 
 0.735
SeMB42_g00277
RNase_PH domain-containing protein.
   
 
 0.729
Your Current Organism:
Synchytrium endobioticum
NCBI taxonomy Id: 286115
Other names: S. endobioticum
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