STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SeMB42_g05123LINES_N domain-containing protein. (454 aa)    
Predicted Functional Partners:
SeMB42_g02363
Uncharacterized protein.
    
 0.748
SeMB42_g05961
acidPPc domain-containing protein.
    
 0.719
SeMB42_g06148
Uncharacterized protein.
     
 0.662
SeMB42_g03782
Neutral ceramidase.
     
 0.652
SeMB42_g04872
Metallophos domain-containing protein.
     
 0.618
SeMB42_g04213
Uncharacterized protein.
   
 0.611
SeMB42_g03959
Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.
   
 0.589
SeMB42_g00795
Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.
   
 0.589
ISC1
Sphingomyelin phosphodiesterase.
     
 0.572
SeMB42_g07277
Uncharacterized protein.
    
 0.569
Your Current Organism:
Synchytrium endobioticum
NCBI taxonomy Id: 286115
Other names: S. endobioticum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.