STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HEM14Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX. (519 aa)    
Predicted Functional Partners:
HEM15
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.
 
 
 0.978
HEM12
Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.
 
 
 0.974
SeMB42_g04141
Uncharacterized protein.
  
 
 0.926
HEM13
Coproporphyrinogen oxidase.
  
 
 0.890
SeMB42_g05153
SWIRM domain-containing protein.
  
 
 0.821
SeMB42_g02157
Amino_oxidase domain-containing protein.
  
 
 0.805
HEM4
Uroporphyrinogen-III synthase.
  
 
 0.774
SPE3
Spermidine synthase; Belongs to the spermidine/spermine synthase family.
  
 
  0.767
SeMB42_g07673
NAD(P)-bd_dom domain-containing protein.
    
  0.749
GAL10
UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
    
  0.749
Your Current Organism:
Synchytrium endobioticum
NCBI taxonomy Id: 286115
Other names: S. endobioticum
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