STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SeMB42_g04907Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family. (521 aa)    
Predicted Functional Partners:
SeMB42_g06427
Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.
    
 
 0.907
SeMB42_g03046
Histone domain-containing protein.
   
 0.830
SeMB42_g01489
Histone domain-containing protein.
   
 0.830
SeMB42_g01112
Histone H3; Belongs to the histone H3 family.
   
 0.830
SeMB42_g02377
Uncharacterized protein.
   
 0.770
SeMB42_g01113
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 0.743
SeMB42_g03536
Bms1-type G domain-containing protein.
   
  0.734
SeMB42_g01103
Uncharacterized protein.
   
 0.733
SeMB42_g05055
S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.
    
 0.722
SeMB42_g04660
S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.
    
 0.722
Your Current Organism:
Synchytrium endobioticum
NCBI taxonomy Id: 286115
Other names: S. endobioticum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.