STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SeMB42_g04822Chromo domain-containing protein. (218 aa)    
Predicted Functional Partners:
SeMB42_g01168
Integrase catalytic domain-containing protein.
 
     0.800
SeMB42_g04053
RT_RNaseH_2 domain-containing protein.
 
      0.708
SeMB42_g07980
Reverse transcriptase domain-containing protein.
 
      0.678
SeMB42_g08025
Integrase catalytic domain-containing protein.
 
     0.664
SeMB42_g08014
Reverse transcriptase domain-containing protein.
 
     0.570
SeMB42_g07996
Uncharacterized protein.
 
      0.439
SeMB42_g00643
RT_RNaseH domain-containing protein.
 
      0.437
SeMB42_g01152
Uncharacterized protein.
  
     0.425
SeMB42_g05361
Uncharacterized protein.
  
     0.400
Your Current Organism:
Synchytrium endobioticum
NCBI taxonomy Id: 286115
Other names: S. endobioticum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.