STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SeMB42_g04718Uncharacterized protein. (523 aa)    
Predicted Functional Partners:
SeMB42_g07041
Tr-type G domain-containing protein.
    
 
 0.957
SeMB42_g07340
S1 motif domain-containing protein.
   
 
 0.901
SeMB42_g05272
eIF2B_5 domain-containing protein.
    
 
 0.893
SeMB42_g06495
Uncharacterized protein.
    
 
 0.668
SeMB42_g03523
FHA domain-containing protein.
    
 
 0.668
SeMB42_g00306
Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
    
   0.624
SeMB42_g01934
Uncharacterized protein.
    
 
 0.624
SENM849
Phenylalanine---tRNA ligase.
   
  
 0.621
SeMB42_g03670
Adenylyl cyclase-associated protein; Belongs to the CAP family.
    
 
 0.566
SeMB42_g00166
Glyco_transf_20 domain-containing protein.
    
   0.548
Your Current Organism:
Synchytrium endobioticum
NCBI taxonomy Id: 286115
Other names: S. endobioticum
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