STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SeMB42_g04640Trimethyllysine dioxygenase. (477 aa)    
Predicted Functional Partners:
SeMB42_g03973
TauD domain-containing protein.
  
 
0.800
SeMB42_g03403
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 0.773
SeMB42_g04030
Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.
  
 0.773
SeMB42_g06894
Uncharacterized protein.
    
 0.738
SeMB42_g04494
Uncharacterized protein.
    
  0.720
SeMB42_g04263
Uncharacterized protein; Belongs to the arginase family.
    
  0.697
UGA1
4-aminobutyrate---2-oxoglutarate transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 
 0.678
ILV3
Dihydroxy-acid dehydratase.
     
 0.674
SeMB42_g05249
Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.
  
 0.635
MET2
Homoserine O-acetyltransferase.
  
 0.635
Your Current Organism:
Synchytrium endobioticum
NCBI taxonomy Id: 286115
Other names: S. endobioticum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.