STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SeMB42_g04146Uncharacterized protein. (735 aa)    
Predicted Functional Partners:
SeMB42_g02408
Response regulatory domain-containing protein.
    
 0.975
SeMB42_g03988
Peptidase_M24 domain-containing protein.
  
 0.967
SeMB42_g03785
TRASH domain-containing protein.
   
 
 0.939
SeMB42_g04548
Uncharacterized protein.
   
 0.931
SeMB42_g02965
Uncharacterized protein.
   
 0.925
SeMB42_g00914
Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.
   
 0.925
SeMB42_g00674
Uncharacterized protein.
    
 0.923
SeMB42_g06886
RING-type domain-containing protein.
    
 0.920
SeMB42_g04652
UBX domain-containing protein.
    
 0.920
SeMB42_g07085
Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.
   
 0.918
Your Current Organism:
Synchytrium endobioticum
NCBI taxonomy Id: 286115
Other names: S. endobioticum
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