STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SeMB42_g02750ABC transporter domain-containing protein. (413 aa)    
Predicted Functional Partners:
SeMB42_g02749
ABC transmembrane type-1 domain-containing protein.
 
     0.949
SeMB42_g01124
Uncharacterized protein.
    
 0.818
SeMB42_g06962
DRBM domain-containing protein.
   
 0.787
SeMB42_g04824
Pex14_N domain-containing protein.
   
 0.707
SeMB42_g01358
Uncharacterized protein.
  
 
 0.704
SeMB42_g04459
Uncharacterized protein.
    
 0.703
SeMB42_g04176
Uncharacterized protein.
    
 0.703
SeMB42_g03529
Uncharacterized protein.
   
 
 0.688
SeMB42_g00820
SH3 domain-containing protein.
   
 
 0.687
SeMB42_g02658
GRIP domain-containing protein.
   
 0.683
Your Current Organism:
Synchytrium endobioticum
NCBI taxonomy Id: 286115
Other names: S. endobioticum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.