STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SeMB42_g03160Rav1p_C domain-containing protein. (1436 aa)    
Predicted Functional Partners:
SeMB42_g00525
Uncharacterized protein.
    
 
 0.950
SENM359
H+-transporting two-sector ATPase.
    
 
 0.928
SeMB42_g06948
Uncharacterized protein.
    
 
 0.854
SeMB42_g04874
Uncharacterized protein; Belongs to the SKP1 family.
    
 
 0.813
SeMB42_g01537
Uncharacterized protein; Belongs to the SKP1 family.
    
 
 0.813
SeMB42_g07503
V-type proton ATPase subunit C; Subunit of the peripheral V1 complex of vacuolar ATPase. Subunit C is necessary for the assembly of the catalytic sector of the enzyme and is likely to have a specific function in its catalytic activity. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.
    
 
 0.787
SeMB42_g03187
Skp1_POZ domain-containing protein; Belongs to the SKP1 family.
    
 
 0.746
SeMB42_g00296
Uncharacterized protein.
   
 
 0.663
SeMB42_g01972
V-type proton ATPase subunit a; Essential component of the vacuolar proton pump (V-ATPase), a multimeric enzyme that catalyzes the translocation of protons across the membranes. Required for assembly and activity of the V-ATPase.
   
 
 0.596
SeMB42_g06508
V-type proton ATPase subunit G; Catalytic subunit of the peripheral V1 complex of vacuolar ATPase (V-ATPase). V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.
    
 
 0.544
Your Current Organism:
Synchytrium endobioticum
NCBI taxonomy Id: 286115
Other names: S. endobioticum
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