STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SeMB42_g04798Uncharacterized protein. (871 aa)    
Predicted Functional Partners:
SeMB42_g02663
UBIQUITIN_CONJUGAT_2 domain-containing protein.
    
 
 0.585
SeMB42_g02767
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
    
 
 0.526
SeMB42_g07263
Non-specific serine/threonine protein kinase.
  
 
  
0.502
SeMB42_g07254
Non-specific serine/threonine protein kinase.
  
 
  
0.497
SeMB42_g07986
zf-C2HE domain-containing protein.
    
 
 0.491
SeMB42_g02867
E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.
    
 
 0.473
SeMB42_g06728
Uncharacterized protein; Belongs to the protein kinase superfamily.
  
 
  
0.439
SeMB42_g06493
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
  
 
   0.433
SeMB42_g05590
DTW domain-containing protein.
 
   
  0.403
Your Current Organism:
Synchytrium endobioticum
NCBI taxonomy Id: 286115
Other names: S. endobioticum
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