SeMB42_g02561 protein (Synchytrium endobioticum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SeMB42_g02561

Uncharacterized protein. (1792 aa)

Predicted Functional Partners:

SeMB42_g07730

0.997

SeMB42_g05312

0.995

SeMB42_g00474

0.995

SeMB42_g06257

0.992

SeMB42_g00049

0.990

SeMB42_g03087

0.989

SeMB42_g03039

0.987

SeMB42_g04981

0.982

SeMB42_g07232

0.982

SeMB42_g03654

0.982

Your Current Organism:

Synchytrium endobioticum

NCBI taxonomy Id: 286115
Other names: S. endobioticum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SeMB42_g00049	SeMB42_g00474	A0A507D7R0	A0A507DIV4	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.921
SeMB42_g00049	SeMB42_g02561	A0A507D7R0	A0A507DE54	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Uncharacterized protein.	0.990
SeMB42_g00049	SeMB42_g03039	A0A507D7R0	A0A507D8M2	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	ENTH domain-containing protein.	0.914
SeMB42_g00049	SeMB42_g03087	A0A507D7R0	A0A507CNX0	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Uncharacterized protein.	0.865
SeMB42_g00049	SeMB42_g03654	A0A507D7R0	A0A507D5R2	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Uncharacterized protein.	0.725
SeMB42_g00049	SeMB42_g04981	A0A507D7R0	A0A507C5C9	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Uncharacterized protein.	0.725
SeMB42_g00049	SeMB42_g05312	A0A507D7R0	A0A507CS60	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	F-BAR domain-containing protein.	0.869
SeMB42_g00049	SeMB42_g06257	A0A507D7R0	A0A507CLY9	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	DUF1681 domain-containing protein.	0.763
SeMB42_g00049	SeMB42_g07232	A0A507D7R0	A0A507C694	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Uncharacterized protein.	0.737
SeMB42_g00049	SeMB42_g07730	A0A507D7R0	A0A507BR39	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	0.936
SeMB42_g00474	SeMB42_g00049	A0A507DIV4	A0A507D7R0	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.921
SeMB42_g00474	SeMB42_g02561	A0A507DIV4	A0A507DE54	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	Uncharacterized protein.	0.995
SeMB42_g00474	SeMB42_g03039	A0A507DIV4	A0A507D8M2	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	ENTH domain-containing protein.	0.680
SeMB42_g00474	SeMB42_g05312	A0A507DIV4	A0A507CS60	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	F-BAR domain-containing protein.	0.951
SeMB42_g00474	SeMB42_g06257	A0A507DIV4	A0A507CLY9	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	DUF1681 domain-containing protein.	0.922
SeMB42_g00474	SeMB42_g07730	A0A507DIV4	A0A507BR39	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	0.999
SeMB42_g02561	SeMB42_g00049	A0A507DE54	A0A507D7R0	Uncharacterized protein.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.990
SeMB42_g02561	SeMB42_g00474	A0A507DE54	A0A507DIV4	Uncharacterized protein.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.995
SeMB42_g02561	SeMB42_g03039	A0A507DE54	A0A507D8M2	Uncharacterized protein.	ENTH domain-containing protein.	0.987
SeMB42_g02561	SeMB42_g03087	A0A507DE54	A0A507CNX0	Uncharacterized protein.	Uncharacterized protein.	0.989