STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SeMB42_g02366Uncharacterized protein. (707 aa)    
Predicted Functional Partners:
SeMB42_g07672
Uncharacterized protein.
    
 
 0.713
SeMB42_g06817
WD_REPEATS_REGION domain-containing protein.
    
 
 0.697
SeMB42_g04865
Uncharacterized protein.
    
 
 0.682
SeMB42_g00090
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
   
 
 0.672
SeMB42_g04986
Phosphogluconate dehydrogenase (NADP+-dependent, decarboxylating).
    
   0.532
SeMB42_g02827
Uncharacterized protein.
    
 
 0.524
SeMB42_g06700
RRM domain-containing protein.
    
 
 0.500
SeMB42_g01632
Enhancer of polycomb-like protein.
    
 
 0.490
SeMB42_g02661
Rab GDP dissociation inhibitor; Belongs to the Rab GDI family.
    
 
 0.478
SeMB42_g03435
tRNA-splicing endonuclease subunit Sen2; Constitutes one of the two catalytic subunit of the tRNA- splicing endonuclease complex, a complex responsible for identification and cleavage of the splice sites in pre-tRNA. It cleaves pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3'-cyclic phosphate and 5'-OH termini. There are no conserved sequences at the splice sites, but the intron is invariably located at the same site in the gene, placing the splice sites an invariant distance from the constant structural [...]
    
 
 0.456
Your Current Organism:
Synchytrium endobioticum
NCBI taxonomy Id: 286115
Other names: S. endobioticum
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.